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DOI | 10.5705/ss.202017.0482 |
SPATIAL JOINT SPECIES DISTRIBUTION MODELING USING DIRICHLET PROCESSES | |
Shirota, Shinichiro1; Gelfand, Alan E.2; Banerjee, Sudipto1 | |
发表日期 | 2019 |
ISSN | 1017-0405 |
EISSN | 1996-8507 |
卷号 | 29期号:3页码:1127-1154 |
英文摘要 | Species distribution models usually attempt to explain the presence-absence or abundance of a species at a site in terms of the environmental features (so-called abiotic features) present at the site. Historically, such models have considered species individually. However, it is well established that species interact to influence the presence-absence and abundance (envisioned as biotic factors). As a result, recently joint species distribution models with various types of responses, such as presence-absence, continuous, and ordinal data have attracted a significant amount of interest. Such models incorporate the dependence between species' responses as a proxy for interaction. We address the accommodation of such modeling in the context of a large number of species (e.g., order 10(2)) across sites numbering in the order of 10(2) or 10(3) when, in practice, only a few species are found at any observed site. To do so, we adopt a dimension-reduction approach. The novelty of our approach is that we add spatial dependence. That is, we consider a collection of sites over a relatively small spatial region. As such, we anticipate that the species distribution at a given site will be similar to that at a nearby site. Specifically, we handle dimension reduction using Dirichlet processes, which enables the clustering of species, and add spatial dependence across sites using Gaussian processes. We use simulated data and a plant communities data set for the Cape Floristic Region (CFR) of South Africa to demonstrate our approach. The latter consists of presence-absence measurements for 639 tree species at 662 locations. These two examples demonstrate the improved predictive performance of our method using the aforementioned specification. |
WOS研究方向 | Mathematics |
来源期刊 | STATISTICA SINICA
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文献类型 | 期刊论文 |
条目标识符 | http://gcip.llas.ac.cn/handle/2XKMVOVA/99908 |
作者单位 | 1.Univ Calif Los Angeles, Dept Biostat, 650 Charles E Young Dr, South Los Angeles, CA 90095 USA; 2.Duke Univ, Dept Stat, Durham, NC 27708 USA |
推荐引用方式 GB/T 7714 | Shirota, Shinichiro,Gelfand, Alan E.,Banerjee, Sudipto. SPATIAL JOINT SPECIES DISTRIBUTION MODELING USING DIRICHLET PROCESSES[J],2019,29(3):1127-1154. |
APA | Shirota, Shinichiro,Gelfand, Alan E.,&Banerjee, Sudipto.(2019).SPATIAL JOINT SPECIES DISTRIBUTION MODELING USING DIRICHLET PROCESSES.STATISTICA SINICA,29(3),1127-1154. |
MLA | Shirota, Shinichiro,et al."SPATIAL JOINT SPECIES DISTRIBUTION MODELING USING DIRICHLET PROCESSES".STATISTICA SINICA 29.3(2019):1127-1154. |
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