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Greenhouse gases emitted from soil play a crucial role in the atmospheric environment and global climate change. The theory and technique of detecting stable isotopes in the atmosphere has been widely used to an investigate greenhouse gases from soil. In this paper, we review the current literature on greenhouse gases emitted from soil, including carbon dioxide (CO2), methane (CH4), and nitrous oxide (N2O). We attempt to synthesize recent advances in the theory and application of stable isotopes in greenhouse gases from soil and discuss future research needs and directions.