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DOI10.1080/15592294.2019.1626651
Human aging DNA methylation signatures are conserved but accelerated in cultured fibroblasts
Sturm, Gabriel1; Cardenas, Andres2; Bind, Marie-Abele3; Horvath, Steve4; Wang, Shuang5; Wang, Yunzhang6; Hagg, Sara6; Hirano, Michio7; Picard, Martin1,7,8
发表日期2019
ISSN1559-2294
EISSN1559-2308
卷号14期号:10页码:961-976
英文摘要

Aging is associated with progressive and site-specific changes in DNA methylation (DNAm). These global changes are captured by DNAm clocks that accurately predict chronological age in humans but relatively little is known about how clocks perform in vitro. Here we culture primary human fibroblasts across the cellular lifespan (similar to 6 months) and use four different DNAm clocks to show that age-related DNAm signatures are conserved and accelerated in vitro. The Skin & Blood clock shows the best linear correlation with chronological time (r = 0.90), including during replicative senescence. Although similar in nature, the rate of epigenetic aging is approximately 62x times faster in cultured cells than in the human body. Consistent with in vivo data, cells aged under hyperglycemic conditions exhibit an approximately three years elevation in baseline DNAm age. Moreover, candidate gene-based analyses further corroborate the conserved but accelerated biological aging process in cultured fibroblasts. Fibroblasts mirror the established DNAm topology of the age-related ELOVL2 gene in human blood and the rapid hypermethylation of its promoter cg16867657, which correlates with a linear decrease in ELOVL2 mRNA levels across the lifespan. Using generalized additive modeling on twelve timepoints across the lifespan, we also show how single CpGs exhibit loci-specific, linear and nonlinear trajectories that reach rates up to -47% (hypomethylation) to +23% (hypermethylation) per month. Together, these high-temporal resolution global, gene-specific, and single CpG data highlight the conserved and accelerated nature of epigenetic aging in cultured fibroblasts, which may constitute a system to evaluate age-modifying interventions across the lifespan.


WOS研究方向Biochemistry & Molecular Biology ; Genetics & Heredity
来源期刊EPIGENETICS
文献类型期刊论文
条目标识符http://gcip.llas.ac.cn/handle/2XKMVOVA/99110
作者单位1.Columbia Univ, Dept Psychiat, Div Behav Med, Irving Med Ctr, New York, NY 10032 USA;
2.Univ Calif Berkeley, Sch Publ Hlth, Div Environm Hlth Sci, Berkeley, CA 94720 USA;
3.Harvard Univ, Dept Stat, Cambridge, MA 02138 USA;
4.Univ Calif Los Angeles, David Geffen Sch Med, Human Genet, Los Angeles, CA 90095 USA;
5.Columbia Univ, Med Ctr, Dept Biostat, Mailman Sch Publ Hlth, New York, NY 10032 USA;
6.Karolinska Inst, Dept Med Epidemiol & Biostat, Stockholm, Sweden;
7.Columbia Univ, H Houston Merritt Ctr, Dept Neurol, Columbia Translat Neurosci Initiat,Irving Med Ctr, New York, NY 10032 USA;
8.Columbia Univ, Columbia Aging Ctr, Mailman Sch Publ Hlth, New York, NY 10032 USA
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GB/T 7714
Sturm, Gabriel,Cardenas, Andres,Bind, Marie-Abele,et al. Human aging DNA methylation signatures are conserved but accelerated in cultured fibroblasts[J],2019,14(10):961-976.
APA Sturm, Gabriel.,Cardenas, Andres.,Bind, Marie-Abele.,Horvath, Steve.,Wang, Shuang.,...&Picard, Martin.(2019).Human aging DNA methylation signatures are conserved but accelerated in cultured fibroblasts.EPIGENETICS,14(10),961-976.
MLA Sturm, Gabriel,et al."Human aging DNA methylation signatures are conserved but accelerated in cultured fibroblasts".EPIGENETICS 14.10(2019):961-976.
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