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DOI | 10.1016/j.gene.2018.11.083 |
Changes of alternative splicing in Arabidopsis thaliana grown under different CO2 concentrations | |
Huang, Wei1; Chen, Xi1; Guan, Qijie1; Zhong, Zhuoheng1; Ma, Ji1; Yang, Bingxian1; Wang, Tantan1; Zhu, Wei1,3; Tian, Jingkui1,2 | |
发表日期 | 2019 |
ISSN | 0378-1119 |
EISSN | 1879-0038 |
卷号 | 689页码:43-50 |
英文摘要 | Atmospheric CO2 level is one of the most important factors which affect plant growth and crop production. Although many crucial genes and pathways have been identified in response to atmospheric CO2 changes, the integrated and precise mechanisms of plant CO2 response are not well understood. Alternative splicing (AS) is an important gene regulation process that affects many biological processes in plants. However, the AS pattern changes in plants in response to elevated CO(2 l)evels have not yet been investigated. Here, we used RNA-Seq data of Arabidopsis thaliana grown under different CO2 concentration to analyze the global changes in AS. We found that AS increased with the rise in CO2 concentration. Additionally, we identified 345 differentially expressed (DE) genes and 251 differentially alternative splicing (DAS) genes under the elevated CO2 condition. Moreover, the results showed that the expression of most of the DAS genes did not change significantly, indicating that AS can serve as an independent mechanism for gene regulation in response to elevated CO2. Furthermore, our analysis of function categories revealed that the DAS genes were associated mainly with the stimulus response. Overall, this the first study to explore the changes of AS in plants in response to elevated CO2. |
WOS研究方向 | Genetics & Heredity |
来源期刊 | GENE
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文献类型 | 期刊论文 |
条目标识符 | http://gcip.llas.ac.cn/handle/2XKMVOVA/95063 |
作者单位 | 1.Zhejiang Univ, Coll Biomed Engn & Instrument Sci, Hangzhou 310027, Zhejiang, Peoples R China; 2.Zhejiang Univ, Zhejiang Malaysia Joint Res Ctr Tradit Med, Hangzhou 310027, Zhejiang, Peoples R China; 3.Changshu Qiushi Technol Co Ltd, Suzhou 215000, Peoples R China |
推荐引用方式 GB/T 7714 | Huang, Wei,Chen, Xi,Guan, Qijie,et al. Changes of alternative splicing in Arabidopsis thaliana grown under different CO2 concentrations[J],2019,689:43-50. |
APA | Huang, Wei.,Chen, Xi.,Guan, Qijie.,Zhong, Zhuoheng.,Ma, Ji.,...&Tian, Jingkui.(2019).Changes of alternative splicing in Arabidopsis thaliana grown under different CO2 concentrations.GENE,689,43-50. |
MLA | Huang, Wei,et al."Changes of alternative splicing in Arabidopsis thaliana grown under different CO2 concentrations".GENE 689(2019):43-50. |
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