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Tropical alpine peatlands are among the least studied wetlands types on earth. Their important ecosystem services at local and regional scope are currently threatened by climate and land use changes. Recent studies in these ecosystems suggest their importance to the provision of climate regulation services, prompting a better understanding of the underlying functions and their variability at ecosystem scales. The objective of this study is to determine the variability of methane (CH4) fluxes and carbon (C) sequestration within a tropical alpine peatland in three locations along a microtopographic gradient and its associated plant diversity. These locations accounted for: 1) hummocks, found mostly near the edge of the peat with a water table below the soil surface, 2) lawns, in the transition zone, with a water-table near the soil surface, and 3) hollows, permanently flooded with a water table above the soil surface, composed of small patches of open water intermingled with unconsolidated hummocks that surface the water level. Results indicate that CH4 flux is lowest in the lawns, while C sequestration is highest. Conversely, the hummock and hollow have higher CH4 flux and lower C sequestration. In addition, plant diversity in the lawns is higher than in the hummock and hollow location. Dryer conditions brought by current climate change in the northern Andes are expected to lower the water tables in the peatland. This change is expected to drive a change in CH4 flux and C sequestration at the lawns, currently dominating the peatland, towards values more similar to those measured in the hummocks. This decrease may also represent a change towards the lower plant diversity that characterized the hummock. Such changes will reduce the ratio of C sequestration:CH4 flux signifying the reduction of resilience and increment of vulnerability of the climate-regulating service to further perturbations. (C) 2018 Elsevier B.V. All rights reserved.