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DOI | 10.1002/aps3.1233 |
Toward a large-scale and deep phenological stage annotation of herbarium specimens: Case studies from temperate, tropical, and equatorial floras | |
Lorieul, Titouan1,2; Pearson, Katelin D.3; Ellwood, Elizabeth R.4; Goeau, Herve5,6; Molino, Jean-Francois5; Sweeney, Patrick W.7; Yost, Jennifer M.8; Sachs, Joel9; Mata-Montero, Erick10; Nelson, Gil11; Soltis, Pamela S.12; Bonnet, Pierre5,6; Joly, Alexis2 | |
发表日期 | 2019 |
ISSN | 2168-0450 |
卷号 | 7期号:3 |
英文摘要 | Premise of the Study Phenological annotation models computed on large-scale herbarium data sets were developed and tested in this study. Methods Herbarium specimens represent a significant resource with which to study plant phenology. Nevertheless, phenological annotation of herbarium specimens is time-consuming, requires substantial human investment, and is difficult to mobilize at large taxonomic scales. We created and evaluated new methods based on deep learning techniques to automate annotation of phenological stages and tested these methods on four herbarium data sets representing temperate, tropical, and equatorial American floras. Results Deep learning allowed correct detection of fertile material with an accuracy of 96.3%. Accuracy was slightly decreased for finer-scale information (84.3% for flower and 80.5% for fruit detection). Discussion The method described has the potential to allow fine-grained phenological annotation of herbarium specimens at large ecological scales. Deeper investigation regarding the taxonomic scalability of this approach is needed. |
WOS研究方向 | Plant Sciences |
来源期刊 | APPLICATIONS IN PLANT SCIENCES |
文献类型 | 期刊论文 |
条目标识符 | http://gcip.llas.ac.cn/handle/2XKMVOVA/94245 |
作者单位 | 1.Univ Montpellier, Montpellier 5, France; 2.INRIA, Sophia Antipolis, ZENITH Team, Lab Informat Robot & Microelect Joint Res Unit, F-34095 Montpellier 5, France; 3.Florida Slate Univ, Dept Biol Sci, 319 Stadium Dr, Tallahassee, FL 32306 USA; 4.Nat Hist Museum Los Angeles Cty, La Brea Tar Pits & Museum, Los Angeles, CA 90036 USA; 5.Univ Montpellier, AMAP, CIRAD, CNRS,INRA,IRD, Montpellier, France; 6.CIRAD, UMR AMAP, Montpellier, France; 7.Yale Univ, Peabody Museum Nat Hist, Div Bot, POB 208118, New Haven, CT 06520 USA; 8.Calif Polytech State Univ San Luis Obispo, Dept Biol Sci, 1 Grand Ave, San Luis Obispo, CA 93407 USA; 9.Agr & Agri Food Canada, Ottawa, ON, Canada; 10.Costa Rica Inst Technol, Sch Comp, Cartago, Costa Rica; 11.Florida State Univ, iDigBio, Tallahassee, FL 32306 USA; 12.Univ Florida, Florida Museum Nat Hist, Gainesville, FL 32611 USA |
推荐引用方式 GB/T 7714 | Lorieul, Titouan,Pearson, Katelin D.,Ellwood, Elizabeth R.,et al. Toward a large-scale and deep phenological stage annotation of herbarium specimens: Case studies from temperate, tropical, and equatorial floras[J],2019,7(3). |
APA | Lorieul, Titouan.,Pearson, Katelin D..,Ellwood, Elizabeth R..,Goeau, Herve.,Molino, Jean-Francois.,...&Joly, Alexis.(2019).Toward a large-scale and deep phenological stage annotation of herbarium specimens: Case studies from temperate, tropical, and equatorial floras.APPLICATIONS IN PLANT SCIENCES,7(3). |
MLA | Lorieul, Titouan,et al."Toward a large-scale and deep phenological stage annotation of herbarium specimens: Case studies from temperate, tropical, and equatorial floras".APPLICATIONS IN PLANT SCIENCES 7.3(2019). |
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