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DOI10.1002/aps3.1233
Toward a large-scale and deep phenological stage annotation of herbarium specimens: Case studies from temperate, tropical, and equatorial floras
Lorieul, Titouan1,2; Pearson, Katelin D.3; Ellwood, Elizabeth R.4; Goeau, Herve5,6; Molino, Jean-Francois5; Sweeney, Patrick W.7; Yost, Jennifer M.8; Sachs, Joel9; Mata-Montero, Erick10; Nelson, Gil11; Soltis, Pamela S.12; Bonnet, Pierre5,6; Joly, Alexis2
发表日期2019
ISSN2168-0450
卷号7期号:3
英文摘要

Premise of the Study Phenological annotation models computed on large-scale herbarium data sets were developed and tested in this study. Methods Herbarium specimens represent a significant resource with which to study plant phenology. Nevertheless, phenological annotation of herbarium specimens is time-consuming, requires substantial human investment, and is difficult to mobilize at large taxonomic scales. We created and evaluated new methods based on deep learning techniques to automate annotation of phenological stages and tested these methods on four herbarium data sets representing temperate, tropical, and equatorial American floras. Results Deep learning allowed correct detection of fertile material with an accuracy of 96.3%. Accuracy was slightly decreased for finer-scale information (84.3% for flower and 80.5% for fruit detection). Discussion The method described has the potential to allow fine-grained phenological annotation of herbarium specimens at large ecological scales. Deeper investigation regarding the taxonomic scalability of this approach is needed.


WOS研究方向Plant Sciences
来源期刊APPLICATIONS IN PLANT SCIENCES
文献类型期刊论文
条目标识符http://gcip.llas.ac.cn/handle/2XKMVOVA/94245
作者单位1.Univ Montpellier, Montpellier 5, France;
2.INRIA, Sophia Antipolis, ZENITH Team, Lab Informat Robot & Microelect Joint Res Unit, F-34095 Montpellier 5, France;
3.Florida Slate Univ, Dept Biol Sci, 319 Stadium Dr, Tallahassee, FL 32306 USA;
4.Nat Hist Museum Los Angeles Cty, La Brea Tar Pits & Museum, Los Angeles, CA 90036 USA;
5.Univ Montpellier, AMAP, CIRAD, CNRS,INRA,IRD, Montpellier, France;
6.CIRAD, UMR AMAP, Montpellier, France;
7.Yale Univ, Peabody Museum Nat Hist, Div Bot, POB 208118, New Haven, CT 06520 USA;
8.Calif Polytech State Univ San Luis Obispo, Dept Biol Sci, 1 Grand Ave, San Luis Obispo, CA 93407 USA;
9.Agr & Agri Food Canada, Ottawa, ON, Canada;
10.Costa Rica Inst Technol, Sch Comp, Cartago, Costa Rica;
11.Florida State Univ, iDigBio, Tallahassee, FL 32306 USA;
12.Univ Florida, Florida Museum Nat Hist, Gainesville, FL 32611 USA
推荐引用方式
GB/T 7714
Lorieul, Titouan,Pearson, Katelin D.,Ellwood, Elizabeth R.,et al. Toward a large-scale and deep phenological stage annotation of herbarium specimens: Case studies from temperate, tropical, and equatorial floras[J],2019,7(3).
APA Lorieul, Titouan.,Pearson, Katelin D..,Ellwood, Elizabeth R..,Goeau, Herve.,Molino, Jean-Francois.,...&Joly, Alexis.(2019).Toward a large-scale and deep phenological stage annotation of herbarium specimens: Case studies from temperate, tropical, and equatorial floras.APPLICATIONS IN PLANT SCIENCES,7(3).
MLA Lorieul, Titouan,et al."Toward a large-scale and deep phenological stage annotation of herbarium specimens: Case studies from temperate, tropical, and equatorial floras".APPLICATIONS IN PLANT SCIENCES 7.3(2019).
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