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Previous studies on observed or projected rainfall trends for the Greater Horn of Africa (GHA) generally focus on calendric 3-month periods, and thus partly neglect the complexity of rainfall seasonality in this topographically heterogeneous region. This study introduces a novel and flexible methodology to identify the rainfall seasonality, the onset, cessation and duration of the rainy seasons and the associated uncertainties from rainfall time series. The definition is applied to the Climate Hazards Group InfraRed Precipitation with Stations (CHIRPS) satellite product and an extensive rain gauge data set. A strong agreement with known seasonal dynamics in the region and the commonly used calendric rainy seasons is demonstrated. Compared to the latter definition, a clear added value is found for the new approach as it captures the local rainfall features (associated with, for example, the sea breeze), thus facilitating evaluations across rainfall seasonality borders. While previously known trends are qualitatively confirmed, trends are amplified in some regions using the flexible definition method. Notably, a drying trend in Tanzania and Democratic Republic of Congo and a wetting trend in central Sudan and parts of eastern Ethiopia and Kenya can be detected. The trends are regionally associated with changes in rainy season cessation. CHIRPS and station trend patterns are consistent over larger regions of the GHA, but differ in regions with known rainfall contributions from warmer cloud tops. Discrepancies are found in coastal and topographically complex areas, and regions with an unstable seasonality of rainfall. As expected, CHIRPS shows spatially more homogeneous trends compared to station data. The more precise definition of the rainy season facilitates the assessment of rainfall characteristics like intensity, rainfall amounts or temporal shifts of rainy seasons. This novel methodology could also provide a more adequate calibration of climate model simulations thus potentially enabling more realistic climate change projections for the GHA.