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DOI | 10.1080/1062936X.2014.898691 |
A rule-based expert system for chemical prioritization using effects-based chemical categories | |
Schmieder, P. K.1; Kolanczyk, R. C.1; Hornung, M. W.1; Tapper, M. A.1; Denny, J. S.1; Sheedy, B. R.1; Aladjov, H.2 | |
发表日期 | 2014-04-03 |
ISSN | 1062-936X |
卷号 | 25期号:4页码:253-287 |
英文摘要 | A rule-based expert system (ES) was developed to predict chemical binding to the estrogen receptor (ER) patterned on the research approaches championed by Gilman Veith to whom this article and journal issue are dedicated. The ERES was built to be mechanistically transparent and meet the needs of a specific application, i.e. predict for all chemicals within two well-defined inventories (industrial chemicals used as pesticide inerts and antimicrobial pesticides). These chemicals all lack structural features associated with high affinity binders and thus any binding should be low affinity. Similar to the high-quality fathead minnow database upon which Veith QSARs were built, the ERES was derived from what has been termed gold standard data, systematically collected in assays optimized to detect even low affinity binding and maximizing confidence in the negatives determinations. The resultant logic-based decision tree ERES, determined to be a robust model, contains seven major nodes with multiple effects-based chemicals categories within each. Predicted results are presented in the context of empirical data within local chemical structural groups facilitating informed decision-making. Even using optimized detection assays, the ERES applied to two inventories of >600 chemicals resulted in only ~5% of the chemicals predicted to bind ER. |
英文关键词 | low affinity ER binding;industrial chemicals;expert system;chemical prioritization;effects-based chemical categories |
语种 | 英语 |
WOS记录号 | WOS:000335087400002 |
来源期刊 | SAR AND QSAR IN ENVIRONMENTAL RESEARCH |
来源机构 | 美国环保署 |
文献类型 | 期刊论文 |
条目标识符 | http://gcip.llas.ac.cn/handle/2XKMVOVA/62328 |
作者单位 | 1.US EPA, Off Res & Dev, Natl Hlth & Environm Effects Res Lab, Midcontinent Ecol Div, Duluth, MN 55804 USA; 2.US EPA, Midcontinent Ecol Div, Duluth, MN USA |
推荐引用方式 GB/T 7714 | Schmieder, P. K.,Kolanczyk, R. C.,Hornung, M. W.,et al. A rule-based expert system for chemical prioritization using effects-based chemical categories[J]. 美国环保署,2014,25(4):253-287. |
APA | Schmieder, P. K..,Kolanczyk, R. C..,Hornung, M. W..,Tapper, M. A..,Denny, J. S..,...&Aladjov, H..(2014).A rule-based expert system for chemical prioritization using effects-based chemical categories.SAR AND QSAR IN ENVIRONMENTAL RESEARCH,25(4),253-287. |
MLA | Schmieder, P. K.,et al."A rule-based expert system for chemical prioritization using effects-based chemical categories".SAR AND QSAR IN ENVIRONMENTAL RESEARCH 25.4(2014):253-287. |
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