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DOI10.1080/1062936X.2014.898691
A rule-based expert system for chemical prioritization using effects-based chemical categories
Schmieder, P. K.1; Kolanczyk, R. C.1; Hornung, M. W.1; Tapper, M. A.1; Denny, J. S.1; Sheedy, B. R.1; Aladjov, H.2
发表日期2014-04-03
ISSN1062-936X
卷号25期号:4页码:253-287
英文摘要

A rule-based expert system (ES) was developed to predict chemical binding to the estrogen receptor (ER) patterned on the research approaches championed by Gilman Veith to whom this article and journal issue are dedicated. The ERES was built to be mechanistically transparent and meet the needs of a specific application, i.e. predict for all chemicals within two well-defined inventories (industrial chemicals used as pesticide inerts and antimicrobial pesticides). These chemicals all lack structural features associated with high affinity binders and thus any binding should be low affinity. Similar to the high-quality fathead minnow database upon which Veith QSARs were built, the ERES was derived from what has been termed gold standard data, systematically collected in assays optimized to detect even low affinity binding and maximizing confidence in the negatives determinations. The resultant logic-based decision tree ERES, determined to be a robust model, contains seven major nodes with multiple effects-based chemicals categories within each. Predicted results are presented in the context of empirical data within local chemical structural groups facilitating informed decision-making. Even using optimized detection assays, the ERES applied to two inventories of >600 chemicals resulted in only ~5% of the chemicals predicted to bind ER.


英文关键词low affinity ER binding;industrial chemicals;expert system;chemical prioritization;effects-based chemical categories
语种英语
WOS记录号WOS:000335087400002
来源期刊SAR AND QSAR IN ENVIRONMENTAL RESEARCH
来源机构美国环保署
文献类型期刊论文
条目标识符http://gcip.llas.ac.cn/handle/2XKMVOVA/62328
作者单位1.US EPA, Off Res & Dev, Natl Hlth & Environm Effects Res Lab, Midcontinent Ecol Div, Duluth, MN 55804 USA;
2.US EPA, Midcontinent Ecol Div, Duluth, MN USA
推荐引用方式
GB/T 7714
Schmieder, P. K.,Kolanczyk, R. C.,Hornung, M. W.,et al. A rule-based expert system for chemical prioritization using effects-based chemical categories[J]. 美国环保署,2014,25(4):253-287.
APA Schmieder, P. K..,Kolanczyk, R. C..,Hornung, M. W..,Tapper, M. A..,Denny, J. S..,...&Aladjov, H..(2014).A rule-based expert system for chemical prioritization using effects-based chemical categories.SAR AND QSAR IN ENVIRONMENTAL RESEARCH,25(4),253-287.
MLA Schmieder, P. K.,et al."A rule-based expert system for chemical prioritization using effects-based chemical categories".SAR AND QSAR IN ENVIRONMENTAL RESEARCH 25.4(2014):253-287.
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