CCPortal
DOI10.1038/mp.2016.192
A DNA methylation biomarker of alcohol consumption
Liu, C.1; Marioni, R. E.2; Hedman, A. K.3; Pfeiffer, L.4; Tsai, P-C5; Reynolds, L. M.6; Just, A. C.7; Duan, Q.8; Boer, C. G.9; Tanaka, T.10; Elks, C. E.11; Aslibekyan, S.12; Brody, J. A.13; Kuehnel, B.14; Herder, C.15; Almli, L. M.16; Zhi, D.17; Wang, Y.18; Huan, T.19; Yao, C.20; Mendelson, M. M.21; Joehanes, R.22,23; Liang, L.24; Love, S-A25; Guan, W.26; Shah, S.27; Mcrae, A. F.28; Kretschmer, A.29; Prokisch, H.30; Strauch, K.31; Peters, A.32; Visscher, P. M.33; Wray, N. R.34; Guo, X.35; Wiggins, K. L.36; Smith, A. K.37; Binder, E. B.38; Ressler, K. J.39; Irvin, M. R.40; Absher, D. M.41; Hernandez, D.42; Ferrucci, L.43; Bandinelli, S.; Lohman, K.41,44; Ding, J.45,46,47; Trevisi, L.48; Gustafsson, S.49,50; Sandling, J. H.51,52; Stolk, L.53; Uitterlinden, A. G.54; Yet, I.55; Castillo-Fernandez, J. E.56; Spector, T. D.57; Schwartz, J. D.58; Vokonas, P.; Lind, L.; Li, Y.; Fornage, M.; Arnett, D. K.; Wareham, N. J.; Sotoodehnia, N.; Ong, K. K.; van Meurs, J. B. J.; Conneely, K. N.; Baccarelli, A. A.; Deary, I. J.; Bell, J. T.; North, K. E.; Liu, Y.; Waldenberger, M.; London, S. J.; Ingelsson, E.; Levy, D.
发表日期2018-02-01
ISSN1359-4184
卷号23期号:2页码:422-433
英文摘要

The lack of reliable measures of alcohol intake is a major obstacle to the diagnosis and treatment of alcohol-related diseases. Epigenetic modifications such as DNA methylation may provide novel biomarkers of alcohol use. To examine this possibility, we performed an epigenome-wide association study of methylation of cytosine-phosphate-guanine dinucleotide (CpG) sites in relation to alcohol intake in 13 population-based cohorts (n(total) = 13 317; 54% women; mean age across cohorts 42-76 years) using whole blood (9643 European and 2423 African ancestries) or monocyte-derived DNA (588 European, 263 African and 400 Hispanic ancestry) samples. We performed meta-analysis and variable selection in whole-blood samples of people of European ancestry (n = 6926) and identified 144 CpGs that provided substantial discrimination (area under the curve = 0.90-0.99) for current heavy alcohol intake (>= 42 g per day in men and >= 28 g per day in women) in four replication cohorts. The ancestry-stratified meta-analysis in whole blood identified 328 (9643 European ancestry samples) and 165 (2423 African ancestry samples) alcohol-related CpGs at Bonferroni-adjusted P < 1 x 10(-7). Analysis of the monocyte-derived DNA (n = 1251) identified 62 alcohol-related CpGs at P < 1 x 10(-7). In whole-blood samples of people of European ancestry, we detected differential methylation in two neurotransmitter receptor genes, the gamma-Aminobutyric acid-A receptor delta and gamma-aminobutyric acid B receptor subunit 1; their differential methylation was associated with expression levels of a number of genes involved in immune function. In conclusion, we have identified a robust alcohol-related DNA methylation signature and shown the potential utility of DNA methylation as a clinically useful diagnostic test to detect current heavy alcohol consumption.


语种英语
WOS记录号WOS:000423441700028
来源期刊MOLECULAR PSYCHIATRY
来源机构美国环保署
文献类型期刊论文
条目标识符http://gcip.llas.ac.cn/handle/2XKMVOVA/62119
作者单位1.Framingham Heart Dis Epidemiol Study, Framingham, MA USA;
2.NHLBI, Div Intramural Res, Populat Sci Branch, Bldg 10, Bethesda, MD 20892 USA;
3.Boston Univ, Sch Publ Hlth, Dept Biostat, Boston, MA 02215 USA;
4.Univ Edinburgh, Ctr Cognit Ageing & Cognit Epidemiol, Edinburgh, Midlothian, Scotland;
5.Univ Edinburgh, Inst Genet & Mol Med, Ctr Genom & Expt Med, Med Genet Sect, Edinburgh, Midlothian, Scotland;
6.Univ Queensland, Queensland Brain Inst, Brisbane, Qld, Australia;
7.Uppsala Univ, Dept Med Sci, Mol Epidemiol & Sci Life Lab, Uppsala, Sweden;
8.Helmholtz Zentrum Munchen, German Res Ctr Environm Hlth, Res Unit Mol Epidemiol, Neuherberg, Germany;
9.Helmholtz Zentrum Munchen, German Res Ctr Environm Hlth, Inst Epidemiol 2, Neuherberg, Germany;
10.Kings Coll London, Dept Twin Res & Genet Epidemiol, London, England;
11.Wake Forest Sch Med, Div Publ Hlth Sci, Winston Salem, NC USA;
12.Icahn Sch Med Mt Sinai, Dept Prevent Med, New York, NY 10029 USA;
13.Univ N Carolina, Dept Genet, Chapel Hill, NC USA;
14.Erasmus MC, Dept Internal Med, Rotterdam, Netherlands;
15.NIA, Translat Gerontol Branch, Baltimore, MD 21224 USA;
16.Univ Cambridge, Inst Metab Sci, MRC Epidemiol Unit, Cambridge, England;
17.Univ Alabama Birmingham, Dept Epidemiol, Birmingham, AL USA;
18.Univ Washington, Dept Med, Cardiovasc Hlth Res Unit, Seattle, WA 98195 USA;
19.German Ctr Diabet Res DZD, Munich, Germany;
20.Heinrich Heine Univ, Leibniz Ctr Diabet Res, German Diabet Ctr, Inst Clin Diabetol, Dusseldorf, Germany;
21.Emory Univ, Sch Med, Dept Psychiat & Behav Sci, Atlanta, GA 30322 USA;
22.Univ Texas Hlth Sci Ctr Houston, Sch Biomed Informat, Houston, TX 77030 USA;
23.Univ Texas Hlth Sci Ctr Houston, Sch Publ Hlth, Houston, TX 77030 USA;
24.Univ N Carolina, Dept Epidemiol, Chapel Hill, NC USA;
25.Harvard Med Sch, Hebrew SeniorLife, Boston, MA USA;
26.Harvard Univ, Harvard Sch Publ Hlth, Boston, MA 02115 USA;
27.Univ Minnesota, Sch Publ Hlth, Div Biostat, Minneapolis, MN 55455 USA;
28.Univ Queensland, Inst Mol Biosci, Brisbane, Qld, Australia;
29.Helmholtz Zentrum Munchen, German Res Ctr Environm Hlth, Inst Human Genet, Neuherberg, Germany;
30.Tech Univ Munich, Inst Human Genet, Munich, Germany;
31.Ludwig Maximilians Univ Munchen, Inst Med Informat Biometry & Epidemiol, Munich, Germany;
32.Helmholtz Zentrum Munchen, German Res Ctr Environm Hlth, Inst Genet Epidemiol, Neuherberg, Germany;
33.DZHK German Ctr Cardiovasc Res, Partner Site Munich Heart Alliance, Munich, Germany;
34.Univ Calif Los Angeles, Harbor Med Ctr, Dept Pediat, Inst Translat Genom & Populat Sci,LABioMed, Torrance, CA 90509 USA;
35.Max Planck Inst Psychiat, Munich, Germany;
36.McLean Hosp, Div Depress & Anxiety Disorders, 115 Mill St, Belmont, MA 02178 USA;
37.HudsonAlpha Inst Biotechnol, Huntsville, AL USA;
38.NIH, NIA, Lab Neurogenet, Bldg 10, Bethesda, MD 20892 USA;
39.ASF, Geriatr Unit, Florence, Italy;
40.Wake Forest Sch Med, Dept Internal Med, Winston Salem, NC USA;
41.Harvard TH Chan Sch Publ Hlth, Dept Environm Hlth, Boston, MA USA;
42.Uppsala Univ, Dept Med Sci, Rheumatol & Sci Life Lab, Uppsala, Sweden;
43.Uppsala Univ, Dept Med Sci, Mol Med & Sci Life Lab, Uppsala, Sweden;
44.Harvard TH Chan Sch Publ Hlth, Dept Epidemiol, Boston, MA USA;
45.VA Boston Healthcare Syst, Jamaica Plain, MA USA;
46.Boston Univ, Sch Publ Hlth, Jamaica Plain, MA USA;
47.Boston Univ, Sch Med, Jamaica Plain, MA USA;
48.Uppsala Univ, Dept Med Sci Cardiovasc Epidemiol, Uppsala, Sweden;
49.Univ N Carolina, Dept Genet, Dept Biostat, Chapel Hill, NC USA;
50.Univ N Carolina, Dept Comp Sci, Chapel Hill, NC USA;
51.Univ Texas Hlth Sci Ctr Houston, Inst Mol Med, Houston, TX 77030 USA;
52.Univ Texas Hlth Sci Ctr Houston, Ctr Human Genet, Houston, TX 77030 USA;
53.Univ Kentucky, Coll Publ Hlth, Lexington, KY USA;
54.Emory Univ, Sch Med, Dept Human Genet, Atlanta, GA 30322 USA;
55.Columbia Univ, Mailman Sch Publ Hlth, Dept Environm Hlth Sci, New York, NY USA;
56.Univ Edinburgh, Dept Psychol, Edinburgh, Midlothian, Scotland;
57.Natl Inst Environm Hlth Sci, Dept Hlth & Human Serv, Div Intramural Res, NIH, Res Triangle Pk, NC USA;
58.Stanford Univ, Sch Med, Div Cardiovasc Med, Dept Med, Stanford, CA 94305 USA
推荐引用方式
GB/T 7714
Liu, C.,Marioni, R. E.,Hedman, A. K.,et al. A DNA methylation biomarker of alcohol consumption[J]. 美国环保署,2018,23(2):422-433.
APA Liu, C..,Marioni, R. E..,Hedman, A. K..,Pfeiffer, L..,Tsai, P-C.,...&Levy, D..(2018).A DNA methylation biomarker of alcohol consumption.MOLECULAR PSYCHIATRY,23(2),422-433.
MLA Liu, C.,et al."A DNA methylation biomarker of alcohol consumption".MOLECULAR PSYCHIATRY 23.2(2018):422-433.
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