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DOI10.3389/fimmu.2017.00612
Nature and Consequences of Biological Reductionism for the Immunological Study of Infectious Diseases
Rivas, Ariel L.1; Leitner, Gabriel2; Jankowski, Mark D.3,4; Hoogesteijn, Almira L.5; Iandiorio, Michelle J.6; Chatzipanagiotou, Stylianos7; Ioannidis, Anastasios8; Blum, Shlomo E.2; Piccinini, Renata9; Antoniades, Athos10; Fazio, Jane C.6; Apidianakis, Yiorgos11; Fair, Jeanne M.12; Van Regenmortel, Marc H. V.13
发表日期2017-05-31
ISSN1664-3224
卷号8
英文摘要

Evolution has conserved "economic" systems that perform many functions, faster or better, with less. For example, three to five leukocyte types protect from thousands of pathogens. To achieve so much with so little, biological systems combine their limited elements, creating complex structures. Yet, the prevalent research paradigm is reductionist. Focusing on infectious diseases, reductionist and non-reductionist views are here described. The literature indicates that reductionism is associated with information loss and errors, while non-reductionist operations can extract more information from the same data. When designed to capture one-to-many/many-to-one interactions-including the use of arrows that connect pairs of consecutive observations-non-reductionist (spatial-temporal) constructs eliminate data variability from all dimensions, except along one line, while arrows describe the directionality of temporal changes that occur along the line. To validate the patterns detected by non-reductionist operations, reductionist procedures are needed. Integrated (non-reductionist and reductionist) methods can (i) distinguish data subsets that differ immunologically and statistically; (ii) differentiate false-negative from -positive errors; (iii) discriminate disease stages; (iv) capture in vivo, multilevel interactions that consider the patient, the microbe, and antibiotic-mediated responses; and (v) assess dynamics. Integrated methods provide repeatable and biologically interpretable information.


英文关键词methods;host-microbe interactions;reductionism;non-reductionism;pattern recognition
语种英语
WOS记录号WOS:000402337500001
来源期刊FRONTIERS IN IMMUNOLOGY
来源机构美国环保署
文献类型期刊论文
条目标识符http://gcip.llas.ac.cn/handle/2XKMVOVA/61807
作者单位1.Univ New Mexico, Ctr Global Hlth, Sch Med, Div Infect Dis, Albuquerque, NM 87131 USA;
2.Kimron Vet Inst, Natl Mastitis Ctr, Bet Dagan, Israel;
3.US EPA, Environm Assessment, Seattle, WA USA;
4.Michigan State Univ, Dept Fisheries & Wildlife, E Lansing, MI 48824 USA;
5.CINVESTAV, Human Ecol, Mexico City, DF, Mexico;
6.Univ New Mexico, Sch Med, Dept Internal Med, Albuquerque, NM 87131 USA;
7.Univ Athens, Aeginit Hosp, Med Sch, Dept Biopathol & Clin Microbiol, Athens, Greece;
8.Univ Peloponnese, Fac Human Movement & Qual Life Sci, Dept Nursing, Tripoli, Sparta, Greece;
9.Univ Milan, Dept Vet Med, Milan, Italy;
10.Univ Cyprus, Dept Comp Sci, Nicosia, Cyprus;
11.Univ Cyprus, Dept Biol Sci, Nicosia, Cyprus;
12.Los Alamos Natl Lab Biosecur & Publ Hlth, Los Alamos, NM USA;
13.Univ Strasbourg, CNRS, Sch Biotechnol, Strasbourg, France
推荐引用方式
GB/T 7714
Rivas, Ariel L.,Leitner, Gabriel,Jankowski, Mark D.,et al. Nature and Consequences of Biological Reductionism for the Immunological Study of Infectious Diseases[J]. 美国环保署,2017,8.
APA Rivas, Ariel L..,Leitner, Gabriel.,Jankowski, Mark D..,Hoogesteijn, Almira L..,Iandiorio, Michelle J..,...&Van Regenmortel, Marc H. V..(2017).Nature and Consequences of Biological Reductionism for the Immunological Study of Infectious Diseases.FRONTIERS IN IMMUNOLOGY,8.
MLA Rivas, Ariel L.,et al."Nature and Consequences of Biological Reductionism for the Immunological Study of Infectious Diseases".FRONTIERS IN IMMUNOLOGY 8(2017).
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