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DOI10.1021/acs.analchem.7b02759
Exposome-Scale Investigations Guided by Global Metabolomics, Pathway Analysis, and Cognitive Computing
Warth, Benedikt1,3; Spangler, Scott4; Fang, Mingliang1,5; Johnson, Caroline H.6; Forsberg, Erica M.1; Granados, Ana1; Martin, Richard L.4; Domingo-Almenara, Xavier1; Huan, Tao1; Rinehart, Duane1; Montenegro-Burke, J. Rafael1; Hilmers, Brian1; Aisporna, Aries1; Hoang, Linh T.1; Uritboonthai, Winnie1; Benton, H. Paul1; Richardson, Susan D.7; Williams, Antony J.8; Siuzdak, Gary1,2
发表日期2017-11-07
ISSN0003-2700
卷号89期号:21页码:11505-11513
英文摘要

Concurrent exposure to a wide variety of xenobiotics and their combined toxic effects can play a pivotal role in health and disease, yet are largely unexplored. Investigating the totality of these exposures, i.e., the "exposome", and their specific biological effects constitutes a new paradigm for environmental health but still lacks high-throughput, user-friendly technology. We demonstrate the utility of mass spectrometry-based global exposure metabolomics combined with tailored database queries and cognitive computing for comprehensive exposure assessment and the straightforward elucidation of biological effects. The METLIN Exposome database has been redesigned to help identify environmental toxicants, food contaminants and supplements, drugs, and antibiotics as well as their biotransformation products, through its expansion with over 700 000 chemical structures to now include more than 950 000 unique small molecules. More importantly, we demonstrate how the XCMS/METLIN platform now allows for the readout of the biological effect of a toxicant through metabolomic-derived pathway analysis, and further, artificial intelligence provides a means of assessing the role of a potential toxicant. The presented workflow addresses many of the methodological challenges current exposomics research is facing and will serve to gain a deeper understanding of the impact of environmental exposures and combinatory toxic effects on human health.


语种英语
WOS记录号WOS:000414887000050
来源期刊ANALYTICAL CHEMISTRY
来源机构美国环保署
文献类型期刊论文
条目标识符http://gcip.llas.ac.cn/handle/2XKMVOVA/61598
作者单位1.Scripps Res Inst, Scripps Ctr Metabol & Mass Spectrometry, 10550 North Torrey Pines Rd, La Jolla, CA 92037 USA;
2.Scripps Res Inst, Dept Integrat & Computat Biol, 10550 North Torrey Pines Rd, La Jolla, CA 92037 USA;
3.Univ Vienna, Dept Food Chem & Toxicol, Fac Chem, Wahringerstr 38, A-1090 Vienna, Austria;
4.IBM Corp, Almaden Res Lab, 650 Harry Rd, San Jose, CA 95120 USA;
5.Nanyang Technol Univ, Sch Civil & Environm Engn, Singapore 639798, Singapore;
6.Yale Univ, Yale Sch Publ Hlth, Dept Environm Hlth Sci, 60 Coll St, New Haven, CT 06520 USA;
7.Univ South Carolina, Dept Chem & Biochem, Columbia, SC 29208 USA;
8.US EPA, Natl Ctr Computat Toxicol, 109 TW Alexander Dr, Res Triangle Pk, NC 27711 USA
推荐引用方式
GB/T 7714
Warth, Benedikt,Spangler, Scott,Fang, Mingliang,et al. Exposome-Scale Investigations Guided by Global Metabolomics, Pathway Analysis, and Cognitive Computing[J]. 美国环保署,2017,89(21):11505-11513.
APA Warth, Benedikt.,Spangler, Scott.,Fang, Mingliang.,Johnson, Caroline H..,Forsberg, Erica M..,...&Siuzdak, Gary.(2017).Exposome-Scale Investigations Guided by Global Metabolomics, Pathway Analysis, and Cognitive Computing.ANALYTICAL CHEMISTRY,89(21),11505-11513.
MLA Warth, Benedikt,et al."Exposome-Scale Investigations Guided by Global Metabolomics, Pathway Analysis, and Cognitive Computing".ANALYTICAL CHEMISTRY 89.21(2017):11505-11513.
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