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DOI10.1371/journal.pone.0079020
Identification of Estrogen Target Genes during Zebrafish Embryonic Development through Transcriptomic Analysis
Hao, Ruixin1; Bondesson, Maria1; Singh, Amar V.2; Riu, Anne1; McCollum, Catherine W.1; Knudsen, Thomas B.2; Gorelick, Daniel A.3; Gustafsson, Jan-Ake1,4
发表日期2013-11-06
ISSN1932-6203
卷号8期号:11
英文摘要

Estrogen signaling is important for vertebrate embryonic development. Here we have used zebrafish (Danio rerio) as a vertebrate model to analyze estrogen signaling during development. Zebrafish embryos were exposed to 1 mu M 17 beta-estradiol (E2) or vehicle from 3 hours to 4 days post fertilization (dpf), harvested at 1, 2, 3 and 4 dpf, and subjected to RNA extraction for transcriptome analysis using microarrays. Differentially expressed genes by E2-treatment were analyzed with hierarchical clustering followed by biological process and tissue enrichment analysis. Markedly distinct sets of genes were up and down-regulated by E2 at the four different time points. Among these genes, only the well-known estrogenic marker vtg1 was co-regulated at all time points. Despite this, the biological functional categories targeted by E2 were relatively similar throughout zebrafish development. According to knowledge-based tissue enrichment, estrogen responsive genes were clustered mainly in the liver, pancreas and brain. This was in line with the developmental dynamics of estrogen-target tissues that were visualized using transgenic zebrafish containing estrogen responsive elements driving the expression of GFP (Tg(5xERE: GFP)). Finally, the identified embryonic estrogen-responsive genes were compared to already published estrogen-responsive genes identified in male adult zebrafish (Gene Expression Omnibus database). The expressions of a few genes were co-regulated by E2 in both embryonic and adult zebrafish. These could potentially be used as estrogenic biomarkers for exposure to estrogens or estrogenic endocrine disruptors in zebrafish. In conclusion, our data suggests that estrogen effects on early embryonic zebrafish development are stage-and tissue-specific.


语种英语
WOS记录号WOS:000326656200065
来源期刊PLOS ONE
来源机构美国环保署
文献类型期刊论文
条目标识符http://gcip.llas.ac.cn/handle/2XKMVOVA/60553
作者单位1.Univ Houston, Dept Biol & Biochem, Ctr Nucl Receptors & Cell Signaling, Houston, TX 77204 USA;
2.US EPA, Off Res & Dev, Natl Ctr Computat Toxicol, Res Triangle Pk, NC 27711 USA;
3.Carnegie Inst Sci, Dept Embryol, Baltimore, MD 21210 USA;
4.Karolinska Inst, Dept Biosci & Nutr, Huddinge, Sweden
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GB/T 7714
Hao, Ruixin,Bondesson, Maria,Singh, Amar V.,et al. Identification of Estrogen Target Genes during Zebrafish Embryonic Development through Transcriptomic Analysis[J]. 美国环保署,2013,8(11).
APA Hao, Ruixin.,Bondesson, Maria.,Singh, Amar V..,Riu, Anne.,McCollum, Catherine W..,...&Gustafsson, Jan-Ake.(2013).Identification of Estrogen Target Genes during Zebrafish Embryonic Development through Transcriptomic Analysis.PLOS ONE,8(11).
MLA Hao, Ruixin,et al."Identification of Estrogen Target Genes during Zebrafish Embryonic Development through Transcriptomic Analysis".PLOS ONE 8.11(2013).
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