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DOI10.1214/13-AOAS653
LOCAL ADAPTATION AND GENETIC EFFECTS ON FITNESS: CALCULATIONS FOR EXPONENTIAL FAMILY MODELS WITH RANDOM EFFECTS
Geyer, Charles J.1; Ridley, Caroline E.2; Latta, Robert G.3; Etterson, Julie R.4; Shaw, Ruth G.5
发表日期2013-09-01
ISSN1932-6157
卷号7期号:3页码:1778-1795
英文摘要

Random effects are implemented for aster models using two approximations taken from Breslow and Clayton [J. Amer. Statist. Assoc. 88 (1993) 9-25]. Random effects are analytically integrated out of the Laplace approximation to the complete data log likelihood, giving a closed-form expression for an approximate missing data log likelihood. Third and higher derivatives of the complete data log likelihood with respect to the random effects are ignored, giving a closed-form expression for second derivatives of the approximate missing data log likelihood, hence approximate observed Fisher information. This method is applicable to any exponential family random effects model. It is implemented in the CRAN package aster (R Core Team [R: A Language and Environment for Statistical Computing (2012) R Foundation for Statistical Computing], Geyer [R package aster (2012) http://cran.r-project.org/package=aster]). Applications are analyses of local adaptation in the invasive California wild radish (Raphanus sativus) and the slender wild oat (Avena barbata) and of additive genetic variance for fitness in the partridge pea (Chamaecrista fasciculata).


英文关键词Additive genetic variance;approximate maximum likelihood;breeding value;Darwinian fitness;exponential family;latent variable;life history analysis;local adaptation;missing data;variance components;Avena barbata;Chamaecrista fasciculata;Raphanus sativus
语种英语
WOS记录号WOS:000328198700022
来源期刊ANNALS OF APPLIED STATISTICS
来源机构美国环保署
文献类型期刊论文
条目标识符http://gcip.llas.ac.cn/handle/2XKMVOVA/60192
作者单位1.Univ Minnesota, Sch Stat, Minneapolis, MN 55455 USA;
2.US EPA, Washington, DC 20460 USA;
3.Dalhousie Univ, Dept Biol, Life Sci Ctr, Halifax, NS B3H 4R2, Canada;
4.Univ Minnesota, Dept Biol, Duluth, MN 55812 USA;
5.Univ Minnesota, Dept Ecol Evolut & Behav, St Paul, MN 55108 USA
推荐引用方式
GB/T 7714
Geyer, Charles J.,Ridley, Caroline E.,Latta, Robert G.,et al. LOCAL ADAPTATION AND GENETIC EFFECTS ON FITNESS: CALCULATIONS FOR EXPONENTIAL FAMILY MODELS WITH RANDOM EFFECTS[J]. 美国环保署,2013,7(3):1778-1795.
APA Geyer, Charles J.,Ridley, Caroline E.,Latta, Robert G.,Etterson, Julie R.,&Shaw, Ruth G..(2013).LOCAL ADAPTATION AND GENETIC EFFECTS ON FITNESS: CALCULATIONS FOR EXPONENTIAL FAMILY MODELS WITH RANDOM EFFECTS.ANNALS OF APPLIED STATISTICS,7(3),1778-1795.
MLA Geyer, Charles J.,et al."LOCAL ADAPTATION AND GENETIC EFFECTS ON FITNESS: CALCULATIONS FOR EXPONENTIAL FAMILY MODELS WITH RANDOM EFFECTS".ANNALS OF APPLIED STATISTICS 7.3(2013):1778-1795.
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