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DOI10.1016/j.aquatox.2013.09.004
Molecular target sequence similarity as a basis for species extrapolation to assess the ecological risk of chemicals with known modes of action
LaLone, Carlie A.1; Villeneuve, Daniel L.1; Burgoon, Lyle D.2; Russom, Christine L.1; Helgen, Henry W.3; Berninger, Jason P.4; Tietge, Joseph E.1; Severson, Megan N.1; Cavallin, Jenna E.5; Ankley, Gerald T.1
发表日期2013-11-15
ISSN0166-445X
卷号144页码:141-154
英文摘要

It is not feasible to conduct toxicity tests with all species that may be impacted by chemical exposures. Therefore, cross-species extrapolation is fundamental to environmental risk assessment. Recognition of the impracticality of generating empirical, whole organism, toxicity data for the extensive universe of chemicals in commerce has been an impetus driving the field of predictive toxicology. We describe a strategy that leverages expanding databases of molecular sequence information together with identification of specific molecular chemical targets whose perturbation can lead to adverse outcomes to support predictive species extrapolation. This approach can be used to predict which species may be more (or less) susceptible to effects following exposure to chemicals with known modes of action (e.g., pharmaceuticals, pesticides). Primary amino acid sequence alignments are combined with more detailed analyses of conserved functional domains to derive the predictions. This methodology employs bioinformatic approaches to automate, collate, and calculate quantitative metrics associated with cross-species sequence similarity of key molecular initiating events (MIEs). Case examples focused on the actions of (a) 17 alpha-ethinyl estradiol on the human (Homo sapiens) estrogen receptor; (b) permethrin on the mosquito (Aedes aegypti)voltage-gated para-like sodium channel; and (c) 17 beta-trenbolone on the bovine (Bos taurus) androgen receptor are presented to demonstrate the potential predictive utility of this species extrapolation strategy. The examples compare empirical toxicity data to cross-species predictions of intrinsic susceptibility based on analyses of sequence similarity relevant to the MIEs of defined adverse outcome pathways. Through further refinement, and definition of appropriate domains of applicability, we envision practical and routine utility for the molecular target similarity-based predictive method in chemical risk assessment, particularly where testing resources are limited. Published by Elsevier B.V.


英文关键词Predictive toxicology;Protein sequence similarity;Molecular target;Relative intrinsic susceptibility;Conserved functional domains
语种英语
WOS记录号WOS:000330817200016
来源期刊AQUATIC TOXICOLOGY
来源机构美国环保署
文献类型期刊论文
条目标识符http://gcip.llas.ac.cn/handle/2XKMVOVA/59319
作者单位1.US EPA, Off Res & Dev, Natl Hlth & Environm Effects Res Lab, Midcontinent Ecol Div, Duluth, MN 55804 USA;
2.US EPA, Off Res & Dev, Natl Ctr Environm Assessment, Res Triangle Pk, NC 27709 USA;
3.Comp Sci Corp, North Amer Publ Sect, Duluth, MN 55804 USA;
4.CNR, Duluth, MN 55804 USA;
5.US EPA, ORISE Res Participat Program, Off Res & Dev, Natl Hlth & Environm Effects Res Lab,Midcontinent, Duluth, MN 55804 USA
推荐引用方式
GB/T 7714
LaLone, Carlie A.,Villeneuve, Daniel L.,Burgoon, Lyle D.,et al. Molecular target sequence similarity as a basis for species extrapolation to assess the ecological risk of chemicals with known modes of action[J]. 美国环保署,2013,144:141-154.
APA LaLone, Carlie A..,Villeneuve, Daniel L..,Burgoon, Lyle D..,Russom, Christine L..,Helgen, Henry W..,...&Ankley, Gerald T..(2013).Molecular target sequence similarity as a basis for species extrapolation to assess the ecological risk of chemicals with known modes of action.AQUATIC TOXICOLOGY,144,141-154.
MLA LaLone, Carlie A.,et al."Molecular target sequence similarity as a basis for species extrapolation to assess the ecological risk of chemicals with known modes of action".AQUATIC TOXICOLOGY 144(2013):141-154.
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