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DOI | 10.1093/toxsci/kft094 |
Temporal Concordance Between Apical and Transcriptional Points of Departure for Chemical Risk Assessment | |
Thomas, Russell S.1; Wesselkamper, Scott C.2; Wang, Nina Ching Y.2; Zhao, Q. Jay2; Petersen, Dan D.2; Lambert, Jason C.2; Cote, Ila3; Yang, Longlong1; Healy, Eric1; Black, Michael B.1; Clewell, Harvey J., III1; Allen, Bruce C.4; Andersen, Melvin E.1 | |
发表日期 | 2013-07-01 |
ISSN | 1096-6080 |
卷号 | 134期号:1页码:180-194 |
英文摘要 | The number of legacy chemicals without toxicity reference values combined with the rate of new chemical development is overwhelming the capacity of the traditional risk assessment paradigm. More efficient approaches are needed to quantitatively estimate chemical risks. In this study, rats were dosed orally with multiple doses of six chemicals for 5 days and 2, 4, and 13 weeks. Target organs were analyzed for traditional histological and organ weight changes and transcriptional changes using microarrays. Histological and organ weight changes in this study and the tumor incidences in the original cancer bioassays were analyzed using benchmark dose (BMD) methods to identify noncancer and cancer points of departure. The dose-response changes in gene expression were also analyzed using BMD methods and the responses grouped based on signaling pathways. A comparison of transcriptional BMD values for the most sensitive pathway with BMD values for the noncancer and cancer apical endpoints showed a high degree of correlation at all time points. When the analysis included data from an earlier study with eight additional chemicals, transcriptional BMD values for the most sensitive pathway were significantly correlated with noncancer (r = 0.827, p = 0.0031) and cancer-related (r = 0.940, p = 0.0002) BMD values at 13 weeks. The average ratio of apical-to-transcriptional BMD values was less than two, suggesting that for the current chemicals, transcriptional perturbation did not occur at significantly lower doses than apical responses. Based on our results, we propose a practical framework for application of transcriptomic data to chemical risk assessment. |
英文关键词 | bioinformatics;microarray;toxicogenomics;risk assessment;dose response;safety evaluation |
语种 | 英语 |
WOS记录号 | WOS:000320907900016 |
来源期刊 | TOXICOLOGICAL SCIENCES
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来源机构 | 美国环保署 |
文献类型 | 期刊论文 |
条目标识符 | http://gcip.llas.ac.cn/handle/2XKMVOVA/58099 |
作者单位 | 1.Hamner Inst Hlth Sci, Res Triangle Pk, NC 27709 USA; 2.US EPA, Natl Ctr Environm Assessment, Cincinnati, OH 45268 USA; 3.US EPA, Natl Ctr Environm Assessment, Arlington, VA 22202 USA; 4.Bruce Allen Consulting, Chapel Hill, NC 27514 USA |
推荐引用方式 GB/T 7714 | Thomas, Russell S.,Wesselkamper, Scott C.,Wang, Nina Ching Y.,et al. Temporal Concordance Between Apical and Transcriptional Points of Departure for Chemical Risk Assessment[J]. 美国环保署,2013,134(1):180-194. |
APA | Thomas, Russell S..,Wesselkamper, Scott C..,Wang, Nina Ching Y..,Zhao, Q. Jay.,Petersen, Dan D..,...&Andersen, Melvin E..(2013).Temporal Concordance Between Apical and Transcriptional Points of Departure for Chemical Risk Assessment.TOXICOLOGICAL SCIENCES,134(1),180-194. |
MLA | Thomas, Russell S.,et al."Temporal Concordance Between Apical and Transcriptional Points of Departure for Chemical Risk Assessment".TOXICOLOGICAL SCIENCES 134.1(2013):180-194. |
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