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DOI10.1093/toxsci/kfv324
Baseline Chromatin Modification Levels May Predict Interindividual Variability in Ozone-Induced Gene Expression
McCullough, Shaun D.1; Bowers, Emma C.2; On, Doan M.1; Morgan, David S.1; Dailey, Lisa A.1; Hines, Ronald N.1; Devlin, Robert B.1; Diaz-Sanchez, David1
发表日期2016-03-01
ISSN1096-6080
卷号150期号:1页码:216-224
英文摘要

Traditional toxicological paradigms have relied on factors such as age, genotype, and disease status to explain variability in responsiveness to toxicant exposure; however, these are neither sufficient to faithfully identify differentially responsive individuals nor are they modifiable factors that can be leveraged to mitigate the exposure effects. Unlike these factors, the epigenome is dynamic and shaped by an individual's environment. We sought to determine whether baseline levels of specific chromatin modifications correlated with the interindividual variability in their ozone (O-3)-mediated induction in an air-liquid interface model using primary human bronchial epithelial cells from a panel of 11 donors. We characterized the relationship between the baseline abundance of 6 epigenetic markers with established roles as key regulators of gene expression-histone H3 lysine 4 trimethylation (H3K4me3), H3K27 acetylation (H3K27ac), pan-acetyl H4 (H4ac), histone H3K27 di/trimethylation (H3K27me2/3), unmodified H3, and 5-hydroxymethylcytosine (5-hmC)-and the variability in the O-3-induced expression of IL-8, IL-6, COX2, and HMOX1. Baseline levels of H3K4me3, H3K27me2/3, and 5-hmC, but not H3K27ac, H4ac, and total H3, correlated with the interindividual variability in O-3-mediated induction of HMOX1 and COX2. In contrast, none of the chromatin modifications that we examined correlated with the induction of IL-8 and IL-6. From these findings, we propose an "epigenetic seed and soil" model in which chromatin modification states between individuals differ in the relative abundance of specific modifications (the "soil") that govern how receptive the gene is to toxicant-mediated cellular signals (the "seed") and thus regulate the magnitude of exposure-related gene induction.


英文关键词chromatin;DNA methylation;histone;ozone;epigenetics
语种英语
WOS记录号WOS:000371615300019
来源期刊TOXICOLOGICAL SCIENCES
来源机构美国环保署
文献类型期刊论文
条目标识符http://gcip.llas.ac.cn/handle/2XKMVOVA/58064
作者单位1.US EPA, Natl Hlth & Environm Effects Res Lab, Res Triangle Pk, NC 27711 USA;
2.Univ N Carolina, Curriculum Toxicol, Chapel Hill, NC 27599 USA
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McCullough, Shaun D.,Bowers, Emma C.,On, Doan M.,et al. Baseline Chromatin Modification Levels May Predict Interindividual Variability in Ozone-Induced Gene Expression[J]. 美国环保署,2016,150(1):216-224.
APA McCullough, Shaun D..,Bowers, Emma C..,On, Doan M..,Morgan, David S..,Dailey, Lisa A..,...&Diaz-Sanchez, David.(2016).Baseline Chromatin Modification Levels May Predict Interindividual Variability in Ozone-Induced Gene Expression.TOXICOLOGICAL SCIENCES,150(1),216-224.
MLA McCullough, Shaun D.,et al."Baseline Chromatin Modification Levels May Predict Interindividual Variability in Ozone-Induced Gene Expression".TOXICOLOGICAL SCIENCES 150.1(2016):216-224.
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