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DOI | 10.1016/j.jviromet.2014.01.005 |
Comparison of nucleic acid extraction and reverse transcription-qPCR approaches for detection of GI and GII noroviruses in drinking water | |
Griffin, Shannon M.1; Brinkman, Nichole E.1; Hedrick, Elizabeth J.2; Rhodes, Eric R.1; Fout, G. Shay1 | |
发表日期 | 2014-04-01 |
ISSN | 0166-0934 |
卷号 | 199页码:76-85 |
英文摘要 | The objective of this study was to compare three nucleic acid extraction and reverse transcription-quantitative polymerase chain reaction (RT-qPCR) approaches for norovirus (NoV) detection in drinking water with respect to performance, costs, and analysis time. The approaches evaluated were: (A) an approach that utilizes the QIAamp DNA Blood Mini Kit and multiplex primers and probes for detection; (B) a procedure which includes the NucliSENS Magnetic Extraction Kit and other components of a proposed European Union standard method for NoV detection in foods; and (C) a commercialized assay which uses NucliSENS extraction and Cepheid SmartCycler (R) technologies. Each approach was evaluated by most probable number (MPN) analysis for detection of GI.1 and GII.4 NoVs from human stool. Furthermore, recoveries of spiked primary effluent in tap water concentrates were compared for each approach. Few significant differences were observed between approaches with regard to performance. However, Approach C was the most time consuming and expensive to perform. This research presents a case study of how molecular-based approaches for detection of NoVs can be compared and how various factors may play a role in which approach laboratories choose to employ. Published by Elsevier B.V. |
英文关键词 | Norovirus;qPCR;Molecular detection;Water |
语种 | 英语 |
WOS记录号 | WOS:000333853500012 |
来源期刊 | JOURNAL OF VIROLOGICAL METHODS
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来源机构 | 美国环保署 |
文献类型 | 期刊论文 |
条目标识符 | http://gcip.llas.ac.cn/handle/2XKMVOVA/56828 |
作者单位 | 1.US EPA, Natl Exposure Res Lab, Cincinnati, OH 45268 USA; 2.US EPA, Off Water, Water Secur Div, Cincinnati, OH 45268 USA |
推荐引用方式 GB/T 7714 | Griffin, Shannon M.,Brinkman, Nichole E.,Hedrick, Elizabeth J.,et al. Comparison of nucleic acid extraction and reverse transcription-qPCR approaches for detection of GI and GII noroviruses in drinking water[J]. 美国环保署,2014,199:76-85. |
APA | Griffin, Shannon M.,Brinkman, Nichole E.,Hedrick, Elizabeth J.,Rhodes, Eric R.,&Fout, G. Shay.(2014).Comparison of nucleic acid extraction and reverse transcription-qPCR approaches for detection of GI and GII noroviruses in drinking water.JOURNAL OF VIROLOGICAL METHODS,199,76-85. |
MLA | Griffin, Shannon M.,et al."Comparison of nucleic acid extraction and reverse transcription-qPCR approaches for detection of GI and GII noroviruses in drinking water".JOURNAL OF VIROLOGICAL METHODS 199(2014):76-85. |
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