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DOI10.1016/j.jviromet.2014.01.005
Comparison of nucleic acid extraction and reverse transcription-qPCR approaches for detection of GI and GII noroviruses in drinking water
Griffin, Shannon M.1; Brinkman, Nichole E.1; Hedrick, Elizabeth J.2; Rhodes, Eric R.1; Fout, G. Shay1
发表日期2014-04-01
ISSN0166-0934
卷号199页码:76-85
英文摘要

The objective of this study was to compare three nucleic acid extraction and reverse transcription-quantitative polymerase chain reaction (RT-qPCR) approaches for norovirus (NoV) detection in drinking water with respect to performance, costs, and analysis time. The approaches evaluated were: (A) an approach that utilizes the QIAamp DNA Blood Mini Kit and multiplex primers and probes for detection; (B) a procedure which includes the NucliSENS Magnetic Extraction Kit and other components of a proposed European Union standard method for NoV detection in foods; and (C) a commercialized assay which uses NucliSENS extraction and Cepheid SmartCycler (R) technologies. Each approach was evaluated by most probable number (MPN) analysis for detection of GI.1 and GII.4 NoVs from human stool. Furthermore, recoveries of spiked primary effluent in tap water concentrates were compared for each approach. Few significant differences were observed between approaches with regard to performance. However, Approach C was the most time consuming and expensive to perform. This research presents a case study of how molecular-based approaches for detection of NoVs can be compared and how various factors may play a role in which approach laboratories choose to employ. Published by Elsevier B.V.


英文关键词Norovirus;qPCR;Molecular detection;Water
语种英语
WOS记录号WOS:000333853500012
来源期刊JOURNAL OF VIROLOGICAL METHODS
来源机构美国环保署
文献类型期刊论文
条目标识符http://gcip.llas.ac.cn/handle/2XKMVOVA/56828
作者单位1.US EPA, Natl Exposure Res Lab, Cincinnati, OH 45268 USA;
2.US EPA, Off Water, Water Secur Div, Cincinnati, OH 45268 USA
推荐引用方式
GB/T 7714
Griffin, Shannon M.,Brinkman, Nichole E.,Hedrick, Elizabeth J.,et al. Comparison of nucleic acid extraction and reverse transcription-qPCR approaches for detection of GI and GII noroviruses in drinking water[J]. 美国环保署,2014,199:76-85.
APA Griffin, Shannon M.,Brinkman, Nichole E.,Hedrick, Elizabeth J.,Rhodes, Eric R.,&Fout, G. Shay.(2014).Comparison of nucleic acid extraction and reverse transcription-qPCR approaches for detection of GI and GII noroviruses in drinking water.JOURNAL OF VIROLOGICAL METHODS,199,76-85.
MLA Griffin, Shannon M.,et al."Comparison of nucleic acid extraction and reverse transcription-qPCR approaches for detection of GI and GII noroviruses in drinking water".JOURNAL OF VIROLOGICAL METHODS 199(2014):76-85.
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