气候变化领域集成服务门户(CCPortal): Chromosome level genome assembly of endangered medicinal plant Anisodus tanguticus

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DOI	10.1038/s41597-024-03007-7
	Chromosome level genome assembly of endangered medicinal plant Anisodus tanguticus
	Song, Yongli; Huang, Jian-Ping; Wang, Yong-Jiang; Huang, Sheng-Xiong
发表日期	2024
EISSN	2052-4463
起始页码	11
结束页码	1
卷号	11 期号:1
英文摘要	Anisodus tanguticus is a medicinal herb that belongs to the Anisodus genus of the Solanaceae family. This endangered herb is mainly distributed in Qinghai-Tibet Plateau. In this study, we combined the Illumina short-read, Nanopore long-read and high-throughput chromosome conformation capture (Hi-C) sequencing technologies to de novo assemble the A. tanguticus genome. A high-quality chromosomal-level genome assembly was obtained with a genome size of 1.26 Gb and a contig N50 of 25.07 Mb. Of the draft genome sequences, 97.47% were anchored to 24 pseudochromosomes with a scaffold N50 of 51.28 Mb. In addition, 842.14 Mb of transposable elements occupying 66.70% of the genome assembly were identified and 44,252 protein-coding genes were predicted. The genome assembly of A. tanguticus will provide genetic repertoire to understand the adaptation strategy of Anisodus species in the plateau, which will further promote the conservation of endangered A. tanguticus resources.
语种	英语
WOS研究方向	Science & Technology - Other Topics
WOS类目	Multidisciplinary Sciences
WOS记录号	WOS:001156562600004
来源期刊	SCIENTIFIC DATA
文献类型	期刊论文
条目标识符	http://gcip.llas.ac.cn/handle/2XKMVOVA/291770
作者单位	Chengdu University of Traditional Chinese Medicine; Chinese Academy of Sciences; Kunming Institute of Botany, CAS
推荐引用方式 GB/T 7714	Song, Yongli,Huang, Jian-Ping,Wang, Yong-Jiang,et al. Chromosome level genome assembly of endangered medicinal plant Anisodus tanguticus[J],2024,11(1).
APA	Song, Yongli,Huang, Jian-Ping,Wang, Yong-Jiang,&Huang, Sheng-Xiong.(2024).Chromosome level genome assembly of endangered medicinal plant Anisodus tanguticus.SCIENTIFIC DATA,11(1).
MLA	Song, Yongli,et al."Chromosome level genome assembly of endangered medicinal plant Anisodus tanguticus".SCIENTIFIC DATA 11.1(2024).