气候变化领域集成服务门户(CCPortal): Parapedobacter tibetensis sp. nov., isolated from shore soil of saline lake in Tibet of China and its genome mining of secondary metabolite

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DOI	10.1099/ijsem.0.005784
	Parapedobacter tibetensis sp. nov., isolated from shore soil of saline lake in Tibet of China and its genome mining of secondary metabolite
	Wang, Rui; Xue, Lu; Liu, Zi-Xuan; Li, Dong-Yang; Liu, Hong -Can; Li, Ai-Hua; Zhou, Yu-Guang
发表日期	2023
ISSN	1466-5026
EISSN	1466-5034
卷号	73 期号:3
英文摘要	Five aerobic, Gram- stain-negative, non-motile, non- spore-forming, short rod bacteria strains, designated as C3-1- R+6T, C3 -2-M9, B3- 2- R-7, B3- 2- R-21 and C3 - 2-M2, were isolated from shore soil of LungmuCo Lake in Tibet of China. The 16S rRNA gene sequence comparisons confirmed their affiliation to the genus Parapedobacter of the family Sphingobacteriaceae, and showed that they were most closely related to Parapedobacter lycopersici KACC 18788T with 94.26 % similarities. The average nucleotide identity (ANI), average amino acid identity (AAI) and digital DNA-DNA hybridization (dDDH) values between them and the validly published Parapedobacter species were all below the thresholds for delineating species, supporting that they were novel species of genus Parapedobacter. The ANI, AAI and dDDH values between strains C3-1- R+6T and Parapedobacter lycopersici KACC 18788T were 72, 75, and 18% respectively. Meanwhile, the ANI/AAI and dDDH values between these five isolates were higher than the threshold values, showing that they belonged to the same species of Parapedobacter. According to genome comparison, the novel isolates have some special biosynthetic gene clusters of secondary metabolites including bacteriton, aryl-polyene, lantipeptide and t1pks, which were absent from their most related phylogenetic neighbours P. lycopersici KACC 18788T and P. pyrenivorans CGMCC 1.12195T. The main polar lipids contained phosphatidylethanolamine, one unidentified phospholipid, one unidentified aminolipid, one unidentified glycolipid and five unidentified lipids. The predominant respiratory quinone was MK -7. The major cellular fatty acids were iso-C15:0, summed feature 3 (C16:1 & omega;7c and/or C16:1 & omega;6c) and iso- C17: 0 3 -OH. The genome size of strain C3-1-R+6T was 5 984 948 bp, and its genomic DNA G+C content was 46.21 mol%. To sum up, the five strains were identified as a novel species of the genus Parapedobacter, for which the name Parapedobacter tibetensis sp. nov. was proposed. The type strain was C3-1-R+6T (=CGMCC 1.19194T=KCTC 92150T).
关键词	Sphingobacteriaceae Parapedobacter salt lake Tibet secondary metabolite
英文关键词	SEQUENCES
WOS研究方向	Microbiology
WOS记录号	WOS:001044335000027
来源期刊	INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
文献类型	期刊论文
条目标识符	http://gcip.llas.ac.cn/handle/2XKMVOVA/282853
作者单位	Tianjin University of Commerce; Chinese Academy of Sciences; Institute of Microbiology, CAS; Chinese Academy of Sciences; Institute of Microbiology, CAS
推荐引用方式 GB/T 7714	Wang, Rui,Xue, Lu,Liu, Zi-Xuan,et al. Parapedobacter tibetensis sp. nov., isolated from shore soil of saline lake in Tibet of China and its genome mining of secondary metabolite[J],2023,73(3).
APA	Wang, Rui.,Xue, Lu.,Liu, Zi-Xuan.,Li, Dong-Yang.,Liu, Hong -Can.,...&Zhou, Yu-Guang.(2023).Parapedobacter tibetensis sp. nov., isolated from shore soil of saline lake in Tibet of China and its genome mining of secondary metabolite.INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY,73(3).
MLA	Wang, Rui,et al."Parapedobacter tibetensis sp. nov., isolated from shore soil of saline lake in Tibet of China and its genome mining of secondary metabolite".INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 73.3(2023).