气候变化领域集成服务门户(CCPortal): Bioprospecting for the soil-derived actinobacteria and bioactive secondary metabolites on the Western Qinghai-Tibet Plateau

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DOI	10.3389/fmicb.2023.1247001
	Bioprospecting for the soil-derived actinobacteria and bioactive secondary metabolites on the Western Qinghai-Tibet Plateau
	Liu, Lifang; Liu, Yuyu; Liu, Shaowei; Nikandrova, Arina A.; Imamutdinova, Arina N.; Lukianov, Dmitrii A.; Osterman, Ilya A.; Sergiev, Petr V.; Zhang, Benyin; Zhang, Dejun; Li, Feina; Sun, Chenghang
发表日期	2023
EISSN	1664-302X
卷号	14
英文摘要	Introduction The increase in incidence of multidrug-resistant bacteria and the inadequacy of new antimicrobial drugs have led to a widespread outbreak of bacterial antimicrobial resistance. To discover new antibiotics, biodiversity, and novelty of culturable actinobacteria dwelled in soil of the Western Qinghai-Tibet Plateau were investigated. By integrating antibacterial assay with omics tools, Amycolatopsis sp. A133, a rare actinobacterial strain and its secondary metabolites were further studied.Method Culture-dependent method was used to obtain actinobacterial strains from two soil samples collected from Ali region in Qinghai-Tibet Plateau. The cultural extractions of representative strains were assayed against ESKAPE pathogens by paper-disk diffusion method and the double fluorescent protein reporter pDualrep2 system. An Amycolatopsis strain coded as A133 was prioritized and its secondary metabolites were further analyzed and annotated by omics tools including antiSMASH and GNPS (Global Natural Social Molecular Networking). The predicted rifamycin analogs produced by Amycolatopsis sp. A133 were isolated and identified by chromatographic separation, such as Sephadex LH-20 and HPLC, and spectral analysis, such as NMR and UPLC-HRESI-MS/MS, respectively.Results A total of 406 actinobacteria strains affiliated to 36 genera in 17 families of 9 orders were isolated. Out of 152 representative strains, 63 isolates exhibited antagonistic activity against at least one of the tested pathogens. Among them, 7 positive strains were identified by the pDualrep2 system as either an inhibitor of protein translation or DNA biosynthesis. The cultural broth of Amycolatopsis sp. A133 exhibited a broader antimicrobial activity and can induce expression of TurboRFP. The secondary metabolites produced by strain A133 was annotated as rifamycins and zampanolides by antiSMASH and GNPS analysis. Five members of rifamycins, including rifamycin W, protorifamycin I, rifamycin W-M1, proansamycin B, and rifamycin S, were purified and identified. Rifamycin W-M1, was found as a new member of the naturally occurring rifamycin group of antibiotics.Discussion Assisted by omics tools, the successful and highly efficient discovery of rifamycins, a group of clinically used antibiotics from actinobacteria in Ali area encouraged us to devote more energy to explore new antibiotics from the soils on the Western Tibetan Plateau.
关键词	Qinghai-Tibet Plateau actinobacteria Amycolatopsis rifamycins GNPs
英文关键词	MASS-SPECTROMETRY; RIFAMYCIN-B; SP NOV.; BIOSYNTHESIS; IDENTIFICATION; ANTIBIOTICS; ZAMPANOLIDE; ANSAMYCINS; RIFAMPIN; POTENT
WOS研究方向	Microbiology
WOS记录号	WOS:001093828300001
来源期刊	FRONTIERS IN MICROBIOLOGY
文献类型	期刊论文
条目标识符	http://gcip.llas.ac.cn/handle/2XKMVOVA/282684
作者单位	Chinese Academy of Medical Sciences - Peking Union Medical College; Peking Union Medical College; Chinese Academy of Medical Sciences - Peking Union Medical College; Peking Union Medical College; Skolkovo Institute of Science & Technology; Lomonosov Moscow State University; Lomonosov Moscow State University; Qinghai University; Capital Medical University; Qinghai University
推荐引用方式 GB/T 7714	Liu, Lifang,Liu, Yuyu,Liu, Shaowei,et al. Bioprospecting for the soil-derived actinobacteria and bioactive secondary metabolites on the Western Qinghai-Tibet Plateau[J],2023,14.
APA	Liu, Lifang.,Liu, Yuyu.,Liu, Shaowei.,Nikandrova, Arina A..,Imamutdinova, Arina N..,...&Sun, Chenghang.(2023).Bioprospecting for the soil-derived actinobacteria and bioactive secondary metabolites on the Western Qinghai-Tibet Plateau.FRONTIERS IN MICROBIOLOGY,14.
MLA	Liu, Lifang,et al."Bioprospecting for the soil-derived actinobacteria and bioactive secondary metabolites on the Western Qinghai-Tibet Plateau".FRONTIERS IN MICROBIOLOGY 14(2023).