气候变化领域集成服务门户(CCPortal): Characterization of the complete chloroplast genome of traditional Chinese herb, Solanum japonense Nakai. (Solanaceae)

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DOI	10.1080/23802359.2020.1860713
	Characterization of the complete chloroplast genome of traditional Chinese herb, Solanum japonense Nakai. (Solanaceae)
	Zhang, Xiaoxia; Zhang, Xiaofeng; Wang, Huan; Chen, Shilong; Cheng, Tingfeng; Shi, Shengbo; Zhou, Dangwei
通讯作者	Zhou, DW (通讯作者)，Chinese Acad Sci, Northwest Inst Plateau Biol, Key Lab Adaptat & Evolut Plateau Biota, Xining, Peoples R China.
发表日期	2021
EISSN	2380-2359
起始页码	211
结束页码	213
卷号	6 期号:1
英文摘要	Solanum japonense Nakai. (Solanaceae) is a traditional Chinese medicine and animal fodder in Asian continent. Here, the complete chloroplast genome sequence of S. japonense was determined by the Illumina Hiseq technology. The complete chloroplast genome of S. japonense was 155,415 bp and the GC content was 37.81%. The typical circular quadripartite structure was composed with two inverted repeat (IR) regions with 25,588 bp, a large single-copy (LSC) region (85,931 bp) and a small single-copy (SSC) region (18,344 bp). The chloroplast genome of S. japonense contained 132 unigenes, which contained 86 protein-coding genes, 37 tRNA and 8 rRNA genes and one pseudo-gene. Moreover, 183 SSRs were identified and 65% (119)of them located at LSC region. A Maximum-Likelihood (ML) phylogenetic analysis based on chloroplast genomes indicated that S. japonense was closely related to S.dulcamara, S.nigrum. Our results would provide a valuable resource for resource utilization and the phylogenetic studies of species of Dulcamara sect. in Solanaceae.
英文关键词	Solanum japonense Nakai; chloroplast genome; phylogenetic analysis
语种	英语
WOS研究方向	Genetics & Heredity
WOS类目	Genetics & Heredity
WOS记录号	WOS:000612079200001
来源期刊	MITOCHONDRIAL DNA PART B-RESOURCES
来源机构	中国科学院西北生态环境资源研究院
文献类型	期刊论文
条目标识符	http://gcip.llas.ac.cn/handle/2XKMVOVA/254043
作者单位	[Zhang, Xiaoxia; Zhang, Xiaofeng] Xian Int Univ, Coll Med, Xian, Peoples R China; [Wang, Huan; Chen, Shilong; Cheng, Tingfeng; Shi, Shengbo; Zhou, Dangwei] Chinese Acad Sci, NorthwestInst Plateau Biol, Key Lab Adaptat & Evolut Plateau Biota AEPB, Xining, Peoples R China
推荐引用方式 GB/T 7714	Zhang, Xiaoxia,Zhang, Xiaofeng,Wang, Huan,et al. Characterization of the complete chloroplast genome of traditional Chinese herb, Solanum japonense Nakai. (Solanaceae)[J]. 中国科学院西北生态环境资源研究院,2021,6(1).
APA	Zhang, Xiaoxia.,Zhang, Xiaofeng.,Wang, Huan.,Chen, Shilong.,Cheng, Tingfeng.,...&Zhou, Dangwei.(2021).Characterization of the complete chloroplast genome of traditional Chinese herb, Solanum japonense Nakai. (Solanaceae).MITOCHONDRIAL DNA PART B-RESOURCES,6(1).
MLA	Zhang, Xiaoxia,et al."Characterization of the complete chloroplast genome of traditional Chinese herb, Solanum japonense Nakai. (Solanaceae)".MITOCHONDRIAL DNA PART B-RESOURCES 6.1(2021).