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DOI10.1080/23802359.2020.1860713
Characterization of the complete chloroplast genome of traditional Chinese herb, Solanum japonense Nakai. (Solanaceae)
Zhang, Xiaoxia; Zhang, Xiaofeng; Wang, Huan; Chen, Shilong; Cheng, Tingfeng; Shi, Shengbo; Zhou, Dangwei
通讯作者Zhou, DW (通讯作者),Chinese Acad Sci, Northwest Inst Plateau Biol, Key Lab Adaptat & Evolut Plateau Biota, Xining, Peoples R China.
发表日期2021
EISSN2380-2359
起始页码211
结束页码213
卷号6期号:1
英文摘要Solanum japonense Nakai. (Solanaceae) is a traditional Chinese medicine and animal fodder in Asian continent. Here, the complete chloroplast genome sequence of S. japonense was determined by the Illumina Hiseq technology. The complete chloroplast genome of S. japonense was 155,415 bp and the GC content was 37.81%. The typical circular quadripartite structure was composed with two inverted repeat (IR) regions with 25,588 bp, a large single-copy (LSC) region (85,931 bp) and a small single-copy (SSC) region (18,344 bp). The chloroplast genome of S. japonense contained 132 unigenes, which contained 86 protein-coding genes, 37 tRNA and 8 rRNA genes and one pseudo-gene. Moreover, 183 SSRs were identified and 65% (119)of them located at LSC region. A Maximum-Likelihood (ML) phylogenetic analysis based on chloroplast genomes indicated that S. japonense was closely related to S.dulcamara, S.nigrum. Our results would provide a valuable resource for resource utilization and the phylogenetic studies of species of Dulcamara sect. in Solanaceae.
英文关键词Solanum japonense Nakai; chloroplast genome; phylogenetic analysis
语种英语
WOS研究方向Genetics & Heredity
WOS类目Genetics & Heredity
WOS记录号WOS:000612079200001
来源期刊MITOCHONDRIAL DNA PART B-RESOURCES
来源机构中国科学院西北生态环境资源研究院
文献类型期刊论文
条目标识符http://gcip.llas.ac.cn/handle/2XKMVOVA/254043
作者单位[Zhang, Xiaoxia; Zhang, Xiaofeng] Xian Int Univ, Coll Med, Xian, Peoples R China; [Wang, Huan; Chen, Shilong; Cheng, Tingfeng; Shi, Shengbo; Zhou, Dangwei] Chinese Acad Sci, NorthwestInst Plateau Biol, Key Lab Adaptat & Evolut Plateau Biota AEPB, Xining, Peoples R China
推荐引用方式
GB/T 7714
Zhang, Xiaoxia,Zhang, Xiaofeng,Wang, Huan,et al. Characterization of the complete chloroplast genome of traditional Chinese herb, Solanum japonense Nakai. (Solanaceae)[J]. 中国科学院西北生态环境资源研究院,2021,6(1).
APA Zhang, Xiaoxia.,Zhang, Xiaofeng.,Wang, Huan.,Chen, Shilong.,Cheng, Tingfeng.,...&Zhou, Dangwei.(2021).Characterization of the complete chloroplast genome of traditional Chinese herb, Solanum japonense Nakai. (Solanaceae).MITOCHONDRIAL DNA PART B-RESOURCES,6(1).
MLA Zhang, Xiaoxia,et al."Characterization of the complete chloroplast genome of traditional Chinese herb, Solanum japonense Nakai. (Solanaceae)".MITOCHONDRIAL DNA PART B-RESOURCES 6.1(2021).
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