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DOI	10.1111/ele.12415
	Phylogenies support out-of-equilibrium models of biodiversity
	Manceau M.; Lambert A.; Morlon H.
发表日期	2015
ISSN	1461-023X
EISSN	1461-0248
卷号	18 期号:4
英文摘要	There is a long tradition in ecology of studying models of biodiversity at equilibrium. These models, including the influential Neutral Theory of Biodiversity, have been successful at predicting major macroecological patterns, such as species abundance distributions. But they have failed to predict macroevolutionary patterns, such as those captured in phylogenetic trees. Here, we develop a model of biodiversity in which all individuals have identical demographic rates, metacommunity size is allowed to vary stochastically according to population dynamics, and speciation arises naturally from the accumulation of point mutations. We show that this model generates phylogenies matching those observed in nature if the metacommunity is out of equilibrium. We develop a likelihood inference framework that allows fitting our model to empirical phylogenies, and apply this framework to various mammalian families. Our results corroborate the hypothesis that biodiversity dynamics are out of equilibrium. © 2015 John Wiley & Sons Ltd/CNRS.
英文关键词	Birth-death models; Diversification; Extinction; Macroevolution; Metacommunity dynamics; Neutral Biodiversity Theory; Speciation; Speciation by Genetic Differentiation
学科领域	biodiversity; demography; ecological theory; genetic differentiation; macroecology; mammal; metapopulation; model test; mutation; phylogeny; population dynamics; speciation (biology); stochasticity; Mammalia; animal; biodiversity; biological model; computer simulation; ecology; mammal; phylogeny; population dynamics; procedures; species differentiation; Animals; Biodiversity; Computer Simulation; Ecology; Genetic Speciation; Mammals; Models, Biological; Phylogeny; Population Dynamics
语种	英语
scopus关键词	biodiversity; demography; ecological theory; genetic differentiation; macroecology; mammal; metapopulation; model test; mutation; phylogeny; population dynamics; speciation (biology); stochasticity; Mammalia; animal; biodiversity; biological model; computer simulation; ecology; mammal; phylogeny; population dynamics; procedures; species differentiation; Animals; Biodiversity; Computer Simulation; Ecology; Genetic Speciation; Mammals; Models, Biological; Phylogeny; Population Dynamics
来源期刊	Ecology Letters
文献类型	期刊论文
条目标识符	http://gcip.llas.ac.cn/handle/2XKMVOVA/118731
作者单位	École Normale Supérieure, Institut de Biologie, CNRS UMR 8197, 46 rue d'Ulm, Paris, 75005, France; Collège de France, Center for Interdisciplinary Research in Biology, CNRS UMR 7241, 11 place Marcelin-Berthelot, Paris, 75005, France; UPMC Univ Paris 06, Laboratoire de Probabilités et Modèles Aléatoires, CNRS UMR 7599, 4 place Jussieu, Paris, 75005, France
推荐引用方式 GB/T 7714	Manceau M.,Lambert A.,Morlon H.. Phylogenies support out-of-equilibrium models of biodiversity[J],2015,18(4).
APA	Manceau M.,Lambert A.,&Morlon H..(2015).Phylogenies support out-of-equilibrium models of biodiversity.Ecology Letters,18(4).
MLA	Manceau M.,et al."Phylogenies support out-of-equilibrium models of biodiversity".Ecology Letters 18.4(2015).