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Boreal and temperate forests cover a large part of the Earth. Forest ecosystems are a key focus for research because of their role in the carbon (C) balance and cycle. Increasing atmospheric temperatures, different disturbances (fire, storm and insects) and forest management (clear-cutting) will change considerably the C status of forest ecosystems. Using the eddy covariance (EC) method, we can define interactions among environmental factors that influence the C-balance and whether a forest ecosystem is functioning as a C-sink or C-source or possibly is C-neutral. In our review of published studies of different disturbances, we found that most of the post-disturbance studies based on EC method focused on the effects of forest fire and clear-cutting, only a few studies studies focused on the effects of storms and insects. Generally a forest is a C-source until several years after disturbance and then a forest is able to absorb C and become a C-sink. Recovery to C-sink status required up to 20 years in clear-cut areas. Recovery following wildfire disturbance was much longer, possibly more than 50 years. Recovery to C-sink status required approximately 5 years after storm and insect outbreak, however we can not predict overall recovery period because of the missing data.